PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400026765

Common Name

LOC102587506

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YC

Protein Properties

Length: 155aa MW: 17598.8 Da PI: 4.6974

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400026765	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	124.7	3.5e-39	34	133	2	97
NF-YC 2 lksfwekq...iekatdfknh.elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 +k+fw++q +e+ +dfkn+ l +rikki+k+d+dv+mi+ae+Pvll+kace+fi eltl swl+a+en+rr lkk d+++++ +t PGSC0003DMP400026765 34 VKMFWTDQqreMENINDFKNNlLLQPTRIKKIMKTDKDVRMIAAESPVLLAKACEMFIQELTLCSWLNAQENHRRILKKDDVTDVIMQT 122 699999899****76156789********************************************************** PP NF-YC 87 difdflvdivp 97 d fdflvd+ PGSC0003DMP400026765 123 DNFDFLVDDDT 133 ******865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.86E-22	26	128	IPR009072	Histone-fold
Pfam	PF00808	3.1E-16	57	116	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.2E-26	60	130	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MENNSEKSAV NAAQSAAYPT LSQLNAEKNK QEYVKMFWTD QQREMENIND FKNNLLLQPT 60 RIKKIMKTDK DVRMIAAESP VLLAKACEMF IQELTLCSWL NAQENHRRIL KKDDVTDVIM 120 QTDNFDFLVD DDTDGRSTPS AVPFYVDGGS NGRT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-29	41	130	3	91	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400026765

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006351565.1	1e-113	PREDICTED: nuclear transcription factor Y subunit C-4-like
Swissprot	Q9FMV5	2e-37	NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBL	M1B8B7	1e-111	M1B8B7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400039471	1e-112	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12872	5	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	3e-33	nuclear factor Y, subunit C4

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400026765
Entrez Gene	102587506

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Qi M, et al. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Plant Biotechnol. J., 2019. 17(1): p. 252-263 [PMID:29878511]