PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027092
Common NameLOC102579825
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 95aa    MW: 10715.8 Da    PI: 4.1258
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027092genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.7e-11651347
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                           WT eEd+ + +a + + ++   +W+ +a+  g  +t++++k+++qk+
  PGSC0003DMP400027092  6 TWTREEDKMFENALAIFDKDtqdRWSNVAKATG--KTEEEVKLHYQKL 51
                          7*******************************8..9**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.306152IPR017877Myb-like domain
SMARTSM007174.4E-9354IPR001005SANT/Myb domain
SuperFamilySSF466897.25E-14559IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-6553IPR009057Homeodomain-like
CDDcd001676.44E-7652No hitNo description
PfamPF002491.2E-8651IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MATNSTWTRE EDKMFENALA IFDKDTQDRW SNVAKATGKT EEEVKLHYQK LVEDIENIEA  60
DLVPLPKYNE SEVSKAQLLE AINGNEDGEK DIAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-21268673RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027092
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754519e-90HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755249e-90HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342713.16e-63PREDICTED: protein RADIALIS-like 5
SwissprotQ8GW751e-23RADL5_ARATH; Protein RADIALIS-like 5
TrEMBLM1B9261e-61M1B926_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000399692e-62(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.16e-26RAD-like 5
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]