PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027172
Common NameLOC102604842
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 249aa    MW: 27394.6 Da    PI: 7.7057
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027172genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.3e-20138172135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  PGSC0003DMP400027172 138 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 172
                           ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.4E-19132187IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.89132168IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-14135173No hitNo description
Gene3DG3DSA:3.30.50.103.4E-17136172IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.75E-12137169No hitNo description
PfamPF003205.6E-18138172IPR000679Zinc finger, GATA-type
PROSITE patternPS003440138163IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MNSCGNAYCH GGPCSCNLYY GHENNAYSMF YSTHHEYQKD ENYSENMYSF ASSPSSSSSS  60
VDCTLSLGTP STRLSTTNDE KRVHDEQRRS SSSYMSKCWN ILQNKNHTSS THHHKSGRGS  120
NNVNSGSNNA DPLVARRCAN CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRASAAAAA  180
NGNAGGIGME SSTQHTINGS WAHNSQGQKM PCYTSAYGNH EFRFIEDHDD RDSDNAISFW  240
PFLASQHC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027172
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-112HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346995.10.0PREDICTED: GATA transcription factor 19
TrEMBLM1B9930.0M1B993_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000400740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38182346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-34GATA family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]