PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027196
Common NameLOC102598483
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SRS
Protein Properties Length: 347aa    MW: 37803.4 Da    PI: 7.4467
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027196genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702221.51.8e-681222703154
                DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 
                            g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a++++++++  ++++k+kr+ +  ++s+l st+l
  PGSC0003DMP400027196 122 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTALQQQQQQQG-HNNNKHKRQREDPSASSLVSTRL 209
                           5789***************************************************9988776654.44444445445588889999999 PP

                DUF702  92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                           +s++  + le+ ++P++v+++avf+c+++ss+dd+e++laYq+avsigGhvfkGiLydqG e+
  PGSC0003DMP400027196 210 PSNT--NGLEVGKFPAKVRTSAVFQCIQMSSIDDDEDQLAYQAAVSIGGHVFKGILYDQGHES 270
                           9886..4699999***********************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.0E-65124269IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.9E-27126168IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.8E-24220267IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MANFFSLGGS QEQQHQEISS SQAIVPTDQS NNWFLYRNDH HHNQEIPNTY KGFELWQSGN  60
TPQHQPEQQQ QQPQFRHPIY PLQDLYSTDV GLGVGPSRSG FDISAGDHEA SRSGFVMMRS  120
GGGGISCQDC GNQAKKDCQH MRCRTCCKSR GFQCQTHVKS TWVPAAKRRE RQQQLTALQQ  180
QQQQQGHNNN KHKRQREDPS ASSLVSTRLP SNTNGLEVGK FPAKVRTSAV FQCIQMSSID  240
DDEDQLAYQA AVSIGGHVFK GILYDQGHES QYNNMVAAGG DTSSGGSAGV QHHHHNSAAV  300
ATATTTSGGD GTAAGPSNFL DPSLFPAPLS TFMVAGTQFF PPSRSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190195KHKRQR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027196
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC3319100.0KC331910.1 Solanum lycopersicum expression of terpenoids 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346983.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotK4B6C90.0EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLM1B9B50.0M1B9B5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000401070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.16e-66Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]