PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027217
Common NameLOC102585019
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 171aa    MW: 19538.7 Da    PI: 10.0926
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027217genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000374567123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C+ C+k+F++   L  H  +H
  PGSC0003DMP400027217 45 FECKTCNKRFPSFQALGGHRASH 67
                          89**********99999998887 PP
2zf-C2H215.16.6e-0588110123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC++Cg+ Fs    L  H+r+H
  PGSC0003DMP400027217  88 HKCSICGMEFSLGQALGGHMRRH 110
                           79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0754567IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-124569IPR007087Zinc finger, C2H2
SuperFamilySSF576674.62E-945110No hitNo description
PROSITE profilePS501579.7854572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-485111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03488110IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-988113IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.13888115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MTAMKRSRED DMQIEEEAMA NCALMLLSRF NNTSSLSAHI HINDFECKTC NKRFPSFQAL  60
GGHRASHNKR SRLFGEFLVQ TNKKNKMHKC SICGMEFSLG QALGGHMRRH RDEINKTTAH  120
EQTMIPILKK SNSIKRIFCL DLNLTPRDDN VDFKLWPMAP IASPVLRTFI *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027217
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754505e-96HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363365.11e-125PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD44e-35ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLM1B9D51e-124M1B9D5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000401411e-125(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-37C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]