PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027218
Common NameLOC102584704
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 166aa    MW: 18829.8 Da    PI: 9.7752
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027218genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000653658123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C+ C+k F++   L  H  +H
  PGSC0003DMP400027218 36 FECKTCNKQFPSFQALGGHRASH 58
                          89**********99999998887 PP
2zf-C2H215.26.3e-0579101123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC++Cg+ Fs    L  H+r+H
  PGSC0003DMP400027218  79 HKCSICGMEFSLGQALGGHMRRH 101
                           79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.7643663IPR007087Zinc finger, C2H2
SuperFamilySSF576676.66E-1036101No hitNo description
SMARTSM003550.0943658IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-123660IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-471102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03479101IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.59879106IPR007087Zinc finger, C2H2
PfamPF139123.2E-979103IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MTAMKRRRED NGQVEAEAMA NCALMLLSRL NKDNDFECKT CNKQFPSFQA LGGHRASHNK  60
RSRLLGEFLV QTNTKNKMHK CSICGMEFSL GQALGGHMRR HRDKINKITP EKTMIPILKK  120
SNSSKRINIF GLNLNITPDD DDDNVDDLKL WPMEEAPSPV LRIFI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027218
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363364.11e-121PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD43e-30ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLM1B9D61e-119M1B9D6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000401421e-120(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-31C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]