PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027220
Common NameLOC102584043
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 166aa    MW: 18717.7 Da    PI: 10.443
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027220genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000364466123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C+ C+k+F++   L  H  +H
  PGSC0003DMP400027220 44 FECKTCNKRFPSFQALGGHRASH 66
                          89**********99999998887 PP
2zf-C2H212.90.0003387109123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC++Cg  Fs    L  H+r+H
  PGSC0003DMP400027220  87 HKCSICGVEFSLGQALGGHMRRH 109
                           79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.8474471IPR007087Zinc finger, C2H2
SuperFamilySSF576675.25E-944109No hitNo description
PfamPF139121.3E-124468IPR007087Zinc finger, C2H2
SMARTSM003550.0754466IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-480112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-1087112IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9387114IPR007087Zinc finger, C2H2
SMARTSM003550.08887109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSALKRSRGE DVLVEAEAMA NCALMLLSRF NTNNSSDHHH INDFECKTCN KRFPSFQALG  60
GHRASHNKKP RLLGEFLVQT NKKNKMHKCS ICGVEFSLGQ ALGGHMRRHR DEINKTSRMI  120
PVLTKSNSSK RIFCLDLNLT PRDDNVDFKL WPTAPIASPV LRIFI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-153HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363362.11e-121PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD42e-36ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLM1B9D81e-119M1B9D8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000401441e-120(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-38C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]