PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027272
Common NameLOC102583367
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 165aa    MW: 18585.5 Da    PI: 10.4198
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027272genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0014062123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          + C+ C+k+F++   L  H  +H
  PGSC0003DMP400027272 40 FACKTCNKRFPSFQALGGHRTSH 62
                          78**********99998888777 PP
2zf-C2H212.80.0003583105123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC++Cg+ Fs    L  H+r H
  PGSC0003DMP400027272  83 HKCSICGTEFSLGQALGGHMRGH 105
                           79******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-840105No hitNo description
PfamPF139122.6E-114064IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8894067IPR007087Zinc finger, C2H2
SMARTSM003550.174062IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-476108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-883108IPR007087Zinc finger, C2H2
PROSITE profilePS501579.88983110IPR007087Zinc finger, C2H2
SMARTSM003550.3683105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MTTMKRSRED NGQVEAEAMA NCALMLLSRL NNNNNNNNDF ACKTCNKRFP SFQALGGHRT  60
SHNKKPKLLG EFLVQTNKKN KMHKCSICGT EFSLGQALGG HMRGHRDEIN KITSHEKTMI  120
PILKKSNSSK RINIFGVNFN IKPDDDLKLW PMEEAPSPVL RIFI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027272
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-143HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363360.11e-119PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD47e-29ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLM1B9J01e-118M1B9J0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000402071e-119(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-29C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]