PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027353
Common NameLOC102600844
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 249aa    MW: 28222.1 Da    PI: 8.4479
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027353genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028102124123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++C k F ++  L  H++ H
  PGSC0003DMP400027353 102 FECQYCLKQFANSQALGGHQNAH 124
                           89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.72E-6100129No hitNo description
Gene3DG3DSA:3.30.160.606.6E-5100128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.448102129IPR007087Zinc finger, C2H2
PfamPF139121.0E-5102126IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MAKDVVSSIF QSPSSNINGE NYHESSSKSC IENNNNNNNK KLKIFGFELI DDPKKSPNIV  60
QNNSSKEDQE SVNSSSASTV SSGNIHHQEK ILSNHEEIMK KFECQYCLKQ FANSQALGGH  120
QNAHKKERMR KKRLQLQARK ASLSCYLQPF HNQNYNNNNI INYQFYDPQF NVYEESQISF  180
NPNYDYQVSS SEGGAKWPFH QDSNNYTFTL THGGNNYMKP PSTILDNSSS TKQKSTCKPL  240
DLQLGLSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027353
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355929.10.0PREDICTED: zinc finger protein 5
TrEMBLM1B9Q80.0M1B9Q8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000403270.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.13e-15zinc finger protein 5
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]