PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027373
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 366aa    MW: 41357.2 Da    PI: 5.4422
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027373genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.97.1e-083103432154
                           HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           k +yp++e++++L +++gL+ +q+ +WF N+R +
  PGSC0003DMP400027373 310 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 343
                           469*****************************87 PP
2ELK27.95.3e-10264285122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELKh+L+++Y+++L+++++E++
  PGSC0003DMP400027373 264 ELKHELKQGYKEKLVDIREEIL 285
                           9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.2E-1899143IPR005540KNOX1
PfamPF037905.2E-17101142IPR005540KNOX1
SMARTSM012562.7E-28152207IPR005541KNOX2
PfamPF037911.0E-19157206IPR005541KNOX2
PfamPF037891.9E-6264285IPR005539ELK domain
SMARTSM011889.2E-4264285IPR005539ELK domain
PROSITE profilePS5121310.144264284IPR005539ELK domain
PROSITE profilePS5007111.742284347IPR001356Homeobox domain
SuperFamilySSF466893.94E-16286350IPR009057Homeodomain-like
SMARTSM003891.9E-11286351IPR001356Homeobox domain
CDDcd000861.89E-11287348No hitNo description
Gene3DG3DSA:1.10.10.602.2E-25291348IPR009057Homeodomain-like
PfamPF059208.0E-18304343IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDMPDENSPI LRTSLPEQSS SDVKPLEHQQ PPTWLNREIL LPQSQYTVAG AGENLQSNSN  60
QWLSRSILQR NISDVQASND SDLNKDEFGQ SEVVNWQNAG YKAEILAHPL FEQLLSAHVA  120
CLRIATPVDQ LPRIDAQLAQ SQQVAGKYSG LGHGNLADDK ELDQFLTHYV LLLCSFKEQL  180
QQHVRVHAME AVMACWEIEQ SLQSLTGVSP GEGTGATMSD DEDEQVDSDA NLFEGSLDGH  240
DSMGFGPLIP TESERSLMER VRQELKHELK QGYKEKLVDI REEILRKRRA GKLPGDTTSV  300
LKAWWQSHSK WPYPTEEDKA KLVQETGLQL KQINNWFINQ RKRNWHSNPS SSTALKSKRK  360
RYYVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12287351872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340360RKRNWHSNPSSSTALKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027373
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0047970.0AB004797.1 Nicotiana tabacum NTH23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345637.10.0PREDICTED: homeobox protein knotted-1-like 3
SwissprotP480001e-178KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLM1B9S30.0M1B9S3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000403510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.20.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]