PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027441
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 226aa    MW: 25610.2 Da    PI: 7.7893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027441genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.63e-155298354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          r+h+e+E+rRRdriN  +++Lr+l+P++     +K++Ka  L+ +ve++k+L
  PGSC0003DMP400027441 52 RSHSEAEKRRRDRINAQLSTLRKLIPTS-----EKMDKAGLLRSVVEHVKDL 98
                          78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.594998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1552102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-135298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.31E-1252100No hitNo description
SuperFamilySSF474595.63E-1552110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1355104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.56E-4136177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDDSSCSEYL PETHEILSSW CHNLQEVNCQ LPLIPTNSCY FPTWSQEFSA SRSHSEAEKR  60
RRDRINAQLS TLRKLIPTSE KMDKAGLLRS VVEHVKDLKE RAKEMSTVLN TPSDIDEVII  120
EEEDESSNNN NILVKVSFSC DDRPELFSEL NRGLKNLKLT TIEANITSLG GRIKCIFSLQ  180
SINVVCTTHS LKHSLRVLLA RIATSPSTPN FRIKSKRQRF FLLAT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213218KSKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027441
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338818.11e-165PREDICTED: transcription factor bHLH51-like
TrEMBLM1B9X71e-163M1B9X7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000404481e-164(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.17e-37bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]