PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027661
Common NameLOC102596367
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 527aa    MW: 59489.2 Da    PI: 8.4357
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027661genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82e-18167257199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f k l++s+v++  ++ lp +f+++h   +++++ ++le+e+g+++e+k+i +k++    l++GW++++ a++L egD++vF+l++ ++
  PGSC0003DMP400027661 167 FMKLLVRSHVGSCFWMGLPVPFCKNHL--PRKDTLVILESETGEEYEIKYIAEKTG----LSAGWRKYAAAHKLVEGDVLVFQLVEPTR 249
                           899********************8884..357789***************777777....***********************987666 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f  +v v+r+
  PGSC0003DMP400027661 250 F--KVYVIRA 257
                           6..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-22160258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-20162258IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-24165256No hitNo description
SMARTSM010197.0E-23167258IPR003340B3 DNA binding domain
PROSITE profilePS5086313.352167258IPR003340B3 DNA binding domain
PfamPF023625.9E-16167257IPR003340B3 DNA binding domain
PfamPF052662.4E-7401502IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MKIKVVHRSE PPNQERVSVS YPDMPKKEVF DEEQENQQLG TQEPEPEPDS AIPKLGNDNL  60
SLVDASIPID SLTPSTQTPI SSLLGKRRRK PKEMIDQIST IPFRKKRVFK KQSQSSNGVA  120
DAGRKSISTK LERATADGSG NATQMKSPII IRAEEFLLSI GNEYPSFMKL LVRSHVGSCF  180
WMGLPVPFCK NHLPRKDTLV ILESETGEEY EIKYIAEKTG LSAGWRKYAA AHKLVEGDVL  240
VFQLVEPTRF KVYVIRANDL KEVDGALSLL NLDAPAKQSD AEGTIGNNIK KRQKKSLPLT  300
VVQKRRRKED LSKQLVPLEA QSGNDSDEVA SEILEGSRSS GLAVNFRDIK SLEEFHILVN  360
GVCIDSELPE HIRRKYYELC CSKNAFLHDR LLQGLHCKLV AGMIFEVVNI ADMVRACKLT  420
TPRKEFDKWE KSLKSFELLG MNVGFLRTRL RWLLSLAFDS EGASDTKRYW DAKKEWSRAE  480
DEIRNLEMKL EELKQASGKY VADVEALKSK AESYELMFQG EVNAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289307KKRQKKSLPLTVVQKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027661
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339907.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLM1BAE90.0M1BAE9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000407860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-37B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]