PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027662
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 260aa    MW: 29073.3 Da    PI: 9.3126
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027662genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.93.8e-18167251191
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f k l++s+v++  ++ lp +f+++h   +++++ ++le+e+g+++e+k+i +k++    l++GW++++ a++L egD++vF+l++ ++
  PGSC0003DMP400027662 167 FMKLLVRSHVGSCFWMGLPVPFCKNHL--PRKDTLVILESETGEEYEIKYIAEKTG----LSAGWRKYAAAHKLVEGDVLVFQLVEPTR 249
                           899********************8884..357789***************777777....***********************987666 PP

                           E. CS
                    B3  90 fe 91 
                           f+
  PGSC0003DMP400027662 250 FK 251
                           63 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-19162253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-21162253IPR015300DNA-binding pseudobarrel domain
CDDcd100176.85E-25165254No hitNo description
SMARTSM010191.3E-18167253IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337167258IPR003340B3 DNA binding domain
PfamPF023621.2E-15167252IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MKIKVVHRSE PPNQERVSVS YPDMPKKEVF DEEQENQQLG TQEPEPEPDS AIPKLGNDNL  60
SLVDASIPID SLTPSTQTPI SSLLGKRRRK PKEMIDQIST IPFRKKRVFK KQSQSSNGVA  120
DAGRKSISTK LERATADGSG NATQMKSPII IRAEEFLLSI GNEYPSFMKL LVRSHVGSCF  180
WMGLPVPFCK NHLPRKDTLV ILESETGEEY EIKYIAEKTG LSAGWRKYAA AHKLVEGDVL  240
VFQLVEPTRF KVTLPNFFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187106RRKPKEMIDQISTIPFRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027662
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-127HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339907.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLM1BAF00.0M1BAF0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000407860.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-35B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]