PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027753
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 154aa    MW: 17497 Da    PI: 8.7006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027753genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.11.2e-093421254
                   AP2 12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                           g+++AeIrd + ng   r++lg+f t  e a a+++a++ ++
  PGSC0003DMP400027753  3 MGKYAAEIRDSTRNG--IRVWLGTFNT-GEEALAYDQAALTMR 42
                          69********44465..**********.9999*******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.336152IPR001471AP2/ERF domain
PfamPF008473.6E-4342IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-9342IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-13343IPR001471AP2/ERF domain
CDDcd000186.47E-12442No hitNo description
SMARTSM003807.7E-6453IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MTMGKYAAEI RDSTRNGIRV WLGTFNTGEE ALAYDQAALT MRVRVLANLD GSVGRILKRT  60
ELDMEFIQCD INNLTWRGQI VETVVMNPSF GTQRKGHMFL PPNNAHVGGW IYRWKKYANH  120
DAEQTCYKLD NPHGFPQIAT MVSTRVNFLP LEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027753
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754437e-33HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755167e-33HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM1BAM71e-112M1BAM7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000409211e-113(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-16ethylene response factor 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]