PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027849
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 303aa    MW: 34307.4 Da    PI: 7.7555
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027849genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.8e-3161114255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            rlrWtp+LH+rFv++ve+LGG+++AtPk +l+lm++kgL ++hvkSHLQ+YR+
  PGSC0003DMP400027849  61 VRLRWTPDLHRRFVHVVERLGGHDRATPKLVLQLMNIKGLNIAHVKSHLQMYRS 114
                           59***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.2957117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2957115IPR009057Homeodomain-like
PfamPF002492.4E-862113IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.2E-2262116IPR006447Myb domain, plants
SuperFamilySSF466891.76E-1462115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEDSGGTEFS KTSPNSDQNE EEDENVTSTK LHKDGGSSST STIEESEKKF SVRPYVRSKM  60
VRLRWTPDLH RRFVHVVERL GGHDRATPKL VLQLMNIKGL NIAHVKSHLQ MYRSKKIDDP  120
AQGITNHHKL CMEGGDPYIY YNLSQLPMLS SFKQRFNSTF RYGDVSSRNC QDHDLMHSSI  180
MRQSTIDKAR IGLYTTLNER IFGNNPIDKL TPLFQIAEKS QARILNTPLK RKAEDCDLID  240
LNLSLGVKQK HNSHDDDNDD DDGSTLTLSL SSQRSPSRLK EDVNYAIIEN ARRGASTLDL  300
TL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027849
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2401970.0AC240197.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-208l2 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363620.10.0PREDICTED: putative Myb family transcription factor At1g14600
RefseqXP_006363621.10.0PREDICTED: putative Myb family transcription factor At1g14600
TrEMBLM1BAV70.0M1BAV7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000410710.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43822141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-47G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]