PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027999
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 158aa    MW: 18219.6 Da    PI: 5.9145
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027999genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM812.6e-2561342128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyW 83 
                           ppG+rF Ptd el+++yL+kkv+ +       +l + i+  + y+  P +L k++   e+e yfF+++dk     + k++++    gyW
  PGSC0003DMP400027999   6 PPGYRFMPTDVELIQHYLTKKVHCQLpfsslASLLQDIHANEFYSKSPDNLAKNM--CEREQYFFIHEDKYFGGHTGKSQVVGngIGYW 92 
                           9*********************99987766555556799999*********8554..57899*****999777555555554433799* PP

                   NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +  g++ ++++++g ++glk  L ++   +++++k +W+m  yrl
  PGSC0003DMP400027999  93 QCLGEEIPIYNSEGDVIGLKVNLKYF---SESSKKNNWTMVKYRL 134
                           **************************...4555689*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-253139IPR003441NAC domain
PROSITE profilePS5100526.2945157IPR003441NAC domain
PfamPF023651.2E-166134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MITEFPPGYR FMPTDVELIQ HYLTKKVHCQ LPFSSLASLL QDIHANEFYS KSPDNLAKNM  60
CEREQYFFIH EDKYFGGHTG KSQVVGNGIG YWQCLGEEIP IYNSEGDVIG LKVNLKYFSE  120
SSKKNNWTMV KYRLTCEYDT SDAEVTIHTN FPCNFFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-15513415140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027999
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754513e-91HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016506326.13e-59PREDICTED: NAC domain-containing protein 101-like, partial
TrEMBLM1BB671e-115M1BB67_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000413101e-116(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1616666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.13e-20NAC domain containing protein 46
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]