PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400028010
Common NameLOC102587576
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 231aa    MW: 25714.1 Da    PI: 9.1135
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400028010genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-20101151255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ taeeAa a+++a+ +++g
  PGSC0003DMP400028010 101 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAAIAYDKAAYRMRG 151
                           7********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-32100160IPR001471AP2/ERF domain
PfamPF008476.2E-14101151IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-23101161IPR016177DNA-binding domain
SMARTSM003806.2E-37101165IPR001471AP2/ERF domain
CDDcd000184.55E-31101160No hitNo description
PROSITE profilePS5103223.947101159IPR001471AP2/ERF domain
PRINTSPR003676.5E-11102113IPR001471AP2/ERF domain
PRINTSPR003676.5E-11125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDQQLLPTNF PVYRRNSSFS RLIPCLTETW GDLPLKVDDS EDMVIYGLLK DALSVGWSPF  60
SFTTGEVKSE PREEIESAPE FVPSPAEKTA APVAETPKGR HYRGVRQRPW GKFAAEIRDP  120
AKNGARVWLG TYETAEEAAI AYDKAAYRMR GSKAHLNFPH RIGLNEPEPV RVTAKRRASP  180
EPVSSSENGS MKRRRKAVRK CDGEVESRSS VMQVGCQIEQ LTGVHQLLVS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-3698166270ATERF1
3gcc_A8e-3698166270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174195KRRASPEPVSSSENGSMKRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400028010
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8517350.0EU851735.1 Solanum tuberosum Pti4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365341.21e-171PREDICTED: ethylene-responsive transcription factor 1-like
SwissprotQ404761e-123ERF1_TOBAC; Ethylene-responsive transcription factor 1
TrEMBLM1BB781e-170M1BB78_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000413311e-170(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40542245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-57ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Gonz
    The transcriptional activator Pti4 is required for the recruitment of a repressosome nucleated by repressor SEBF at the potato PR-10a gene.
    Plant Cell, 2008. 20(11): p. 3136-47
    [PMID:19028963]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]