PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400028292
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 262aa    MW: 28955.5 Da    PI: 8.9205
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400028292genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.2e-1681132155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  PGSC0003DMP400028292  81 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 132
                           57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.614146IPR001471AP2/ERF domain
SMARTSM003802.4E-6352IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-10647IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-101247IPR001471AP2/ERF domain
CDDcd000181.57E-111448No hitNo description
CDDcd000186.05E-1281140No hitNo description
SuperFamilySSF541713.14E-1881141IPR016177DNA-binding domain
PfamPF008471.6E-1081132IPR001471AP2/ERF domain
SMARTSM003801.6E-3182146IPR001471AP2/ERF domain
PROSITE profilePS5103219.15182140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1882140IPR001471AP2/ERF domain
PRINTSPR003679.5E-58394IPR001471AP2/ERF domain
PRINTSPR003679.5E-5122142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAGSRFLAII QSTVYLGGYD KEDKAARAYD LAALKYWGPT ATTNFPVTNY TKELEEMKHM  60
TKQEFIASLR RKSSGFSRGA SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFATEEEAA  120
EAYDIAAIKF RGVNAVTNFE MNRYDVEAIM QSSLPVGGTA KRLKLSLESE QKSSSSNNNH  180
QQQQQLTQCN STNNINFGAM PPVSAIPCGV PFDNTTPAFY HHNFFQYLHP GNASVPDASN  240
AAAMPLLPSA ADLFIWPHQS Y*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400028292
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755231e-177HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353275.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ6J9N81e-102AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLM1BBX70.0M1BBX7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000417580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-93AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]