PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400028585

Common Name

LOC102605188

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 247aa MW: 25842 Da PI: 9.246

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400028585	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122	7e-38	31	116	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 ++kk++ +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++s s s + PGSC0003DMP400028585 31 TVKKQPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSLRNSIS--SVS 116 689******************************************************************88743333333333..222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.3E-35	37	124	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.675	37	91	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MSTSVEPNGA VLLDSTAGSG GGVANSNGAL TVKKQPAKDR HSKVDGRGRR IRMPIVCAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTIPAS FSTVSVSLRN SISSVSASAP 120 VDHKLPSPSL LHPLISPAPF LLGKRLRSED DDNGSGDKDV VPSAGFWAVP ARPDFGQVWS 180 FAAPPPEISH SAAMISHPSR LLQQQMEEAS VGRVGNYFPI AQGHLNLLAS LSGSGSGPQR 240 RDDDGQ*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400028585

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC239435	0.0	AC239435.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-305j13 map 1, complete sequence.
GenBank	GQ496333	0.0	GQ496333.1 Solanum lycopersicum TCP transcription factor 15 (TCP15) mRNA, complete cds.
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006348547.1	1e-178	PREDICTED: transcription factor TCP7
Swissprot	Q9FMX2	2e-83	TCP7_ARATH; Transcription factor TCP7
TrEMBL	M1BCL7	1e-177	M1BCL7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400042166	1e-166	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	8e-68	TCP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400028585
Entrez Gene	102605188

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]