PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400028813
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 206aa    MW: 23058.8 Da    PI: 6.8931
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400028813genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like36.79.4e-123760225
               G2-like  2 prlrWtpeLHerFveaveqLGGse 25
                          prlrWt++LH++Fv+ave+LGG +
  PGSC0003DMP400028813 37 PRLRWTHDLHRSFVHAVERLGGVD 60
                          8*********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-103361IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MMKGLKFSEN SPSLSIELGN SNSDQSSIRP YVRSRMPRLR WTHDLHRSFV HAVERLGGVD  60
PEAASGRKRN RIDGSDQMNF PQGNFLHSYY HFNGKAVFDG HLNSNVTTNY LDKIASAPTV  120
FPPPWKPMPE KMMGLEGRCY MFRDFFNGSI TIRDGDDENK IVRAYGTSNL SNKSATSMIE  180
EEDSHSTMSL ELSLSSDISL DLTLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400028813
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754412e-68HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164536.11e-144PREDICTED: transcription repressor KAN1-like
TrEMBLM1BD391e-151M1BD39_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000424801e-152(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13843412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.14e-12G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]