PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400029616
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 247aa    MW: 28001 Da    PI: 7.9542
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400029616genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.54.6e-1177117343
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                           ++k++rr+++NReAAr+sR RKka++++Le+   +L +  +
  PGSC0003DMP400029616  77 SDKVQRRLAQNREAARKSRMRKKAYVQQLEKSNLKLAQLEM 117
                           68****************************86655555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.4E-575138IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.10577121IPR004827Basic-leucine zipper domain
PfamPF001708.3E-878117IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-879115No hitNo description
Gene3DG3DSA:1.20.5.1702.9E-879122No hitNo description
CDDcd147085.29E-2279129No hitNo description
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
PfamPF141445.5E-28166236IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSSTSTQFAP TRRMGIFEPF HHMSMWEDAF RGDIMPSVSA CMVTPANDRA DDKSGYTSSD  60
QLIPSGSEDN QAGKSVSDKV QRRLAQNREA ARKSRMRKKA YVQQLEKSNL KLAQLEMELE  120
RARQQGLYIL GSNGNMGLSS TINPGIAAFE MEYSLWVEEQ QKKNVELRNI LQSHVSEMEL  180
QLLVETVLNH YYNLFRMKVD AAKADVFYLI SGMWRTSVER FFLWIGGFKP SELINVCSPC  240
CIFTAL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400029616
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360289.11e-177PREDICTED: transcription factor TGA7
RefseqXP_015170248.11e-177PREDICTED: transcription factor TGA7
SwissprotQ93ZE22e-89TGA7_ARATH; Transcription factor TGA7
TrEMBLM1BF020.0M1BF02_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000436511e-177(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.17e-92bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]