PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400029625
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 125aa    MW: 14574.5 Da    PI: 9.7914
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400029625genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY24.65e-08102120119
                           ---SS-EEEEEEE--TT-S CS
                  WRKY   1 ldDgynWrKYGqKevkgse 19 
                           ldDgy+WrKYG+K+vk+++
  PGSC0003DMP400029625 102 LDDGYKWRKYGKKKVKSNK 120
                           59**************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-891120IPR003657WRKY domain
SuperFamilySSF1182904.71E-795120IPR003657WRKY domain
PROSITE profilePS508119.84497119IPR003657WRKY domain
PfamPF031061.4E-4103121IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MTQDFSYNNF QDFESSSFLD QLFVDYSPTN KNFNTCILEN DHSHMMTQDC SYNGSSSNSY  60
YATPPNMNHL KEKPKVGIIK KKIKINETHV IALRTKTQLD VLDDGYKWRK YGKKKVKSNK  120
KYLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400029625
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-89HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252561.21e-70probable WRKY transcription factor 51
TrEMBLM1BF112e-87M1BF11_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000436624e-88(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA141921013
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]