PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400029745
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 362aa    MW: 41032.8 Da    PI: 8.1544
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400029745genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.7e-15391161598
                           -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           rl++pk f++++ ++  +   + le +sg++Wev++  + ++g+++ltkGW++F++   +  g f++F ++ rs f  +v++f+
  PGSC0003DMP400029745  39 RLRIPKGFVKRCCNNILN--PVYLEVPSGQVWEVEV--QHSQGQIWLTKGWQDFCDYYSISCGHFLMFGYNARSHF--NVTIFD 116
                           89**********545334..5***************..99999***************************999999..999987 PP
2B354.71.8e-17250334495
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                            + ps+v++  +l++  kfa+++ +++ +   l+l+ + + sW+vk+  + +      ++GWk Fv +n+Lk+gD++vF++ +   ++l
  PGSC0003DMP400029745 250 FMQPSYVSAPFNLSIASKFARKYFLENDG--NLVLRVPGSGSWSVKC--TIGTANAKVGSGWKAFVLENKLKVGDVCVFEVLK---GQL 331
                           56799999***************777545..6***************..777777789**********************544...344 PP

                           EEE CS
                    B3  93 vvk 95 
                           +v 
  PGSC0003DMP400029745 332 FVD 334
                           454 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100179.34E-1525116No hitNo description
Gene3DG3DSA:2.40.330.101.5E-1925118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-1925118IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.1E-828118IPR003340B3 DNA binding domain
PfamPF023626.1E-1239116IPR003340B3 DNA binding domain
PROSITE profilePS5086311.30739118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-23239341IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-21240340IPR015300DNA-binding pseudobarrel domain
CDDcd100175.55E-18245339No hitNo description
SMARTSM010197.1E-15247341IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957247341IPR003340B3 DNA binding domain
PfamPF023622.1E-14250333IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MALSEGFCLG NSSSSSTKNN NVVQPKFYKI ILFQDECIRL RIPKGFVKRC CNNILNPVYL  60
EVPSGQVWEV EVQHSQGQIW LTKGWQDFCD YYSISCGHFL MFGYNARSHF NVTIFDLSAA  120
EIEYPYSLRT FHCHETHHAP ETDLSESNYS FDILEDIPRS QKLKEKVPDM IDHSVENLGD  180
GQFSKRKRHE DDVASPSFTR EGQSRKSLWI HKQESKSVYD QNKTVMDKES TTAYQQAKTF  240
KSKNPFIIVF MQPSYVSAPF NLSIASKFAR KYFLENDGNL VLRVPGSGSW SVKCTIGTAN  300
AKVGSGWKAF VLENKLKVGD VCVFEVLKGQ LFVDVIIFRA AGSTLMHDID NHLAAVKMLK  360
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1721633918141B3 domain-containing transcription factor VRN1
4i1k_B3e-1721633918141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400029745
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-131HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064478.10.0uncharacterized protein LOC107009644
TrEMBLM1BFA10.0M1BFA1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000438520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-41B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]