PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030471
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 232aa    MW: 26357.8 Da    PI: 5.7171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030471genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-124388555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          +   Er RR++++++++ Lr ++Pk      +K++Ka+i++ A+ YI +Lq
  PGSC0003DMP400030471 43 NIVSERIRRNKLKEKLFALRAHVPKI-----TKMDKASIVKDAIAYIEELQ 88
                          5567*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.8053887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-1541106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.00E-114190No hitNo description
PfamPF000103.7E-104388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1544106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-134493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVEENNNYLE TTMFFQPDSY LDEPIISSYY DSSSPEGAQS SKNIVSERIR RNKLKEKLFA  60
LRAHVPKITK MDKASIVKDA IAYIEELQNQ DRRIQGEISE LESETSNKNS AHLQHETFDF  120
SKPKRPTTLD EQQYGYHSSP IDVLKLRISS MRDKTVVVNL TCIKRRDTMV KLCDVFESLN  180
IKIISATIFA SSGTLLHTAF IEADEEESNL LKLRIETAIA SLNNRDSPMS S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030471
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754442e-68HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341751.11e-170PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV94e-66BH035_ARATH; Transcription factor bHLH35
TrEMBLM1BGW81e-169M1BGW8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000449591e-170(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.17e-62bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]