PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030579
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LSD
Protein Properties Length: 153aa    MW: 15975.9 Da    PI: 8.2041
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030579genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.21.4e-132953125
               zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                          C+gCr+lL YP GA+sV+Ca+C++V
  PGSC0003DMP400030579 29 CSGCRNLLLYPVGATSVCCAVCNAV 53
                          ************************9 PP
2zf-LSD146.75.2e-156892125
               zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                          CggC+tlL+Y rGA+sV+C++C+tV
  PGSC0003DMP400030579 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
                          ************************9 PP
3zf-LSD141.81.8e-13106130125
               zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                           Cg+Cr lL+Y +GA+sV+Ca+C++V
  PGSC0003DMP400030579 106 CGNCRMLLMYQYGARSVKCAVCNFV 130
                           ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.105.9E-425127No hitNo description
TIGRFAMsTIGR010531.1E-122656IPR005735Zinc finger, LSD1-type
SuperFamilySSF486953.91E-529127IPR011031Multihaem cytochrome
PfamPF069431.5E-102953IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.4E-156594IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-126892IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.3E-12103133IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-12106130IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MPVPLAPYPT PPTPFTPPAN AGTQSQLVCS GCRNLLLYPV GATSVCCAVC NAVTAVPPPG  60
TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLAMEANQ VAHVNCGNCR MLLMYQYGAR  120
SVKCAVCNFV TSVGVSIKSS LVLSLQSFML RQ*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030579
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754472e-79HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109937.12e-86protein LOL1 isoform X1
RefseqXP_028109938.12e-86protein LOL1 isoform X1
RefseqXP_028109939.12e-86protein LOL1 isoform X1
SwissprotQ93ZB12e-76LOL1_ARATH; Protein LOL1
TrEMBLM1BH581e-104M1BH58_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000451431e-105(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.38e-63lsd one like 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]