PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030610
Common NameLOC102601403
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 249aa    MW: 28224.1 Da    PI: 4.542
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030610genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-171573148
                          TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT eEde+l d++++ G              +W++Ia++++ gRt++++k+ w+++l
  PGSC0003DMP400030610 15 KGPWTSEEDEKLMDYITKNGHTnwqlipkkaglnRWSKIASHLP-GRTDNEIKNLWNTHL 73
                          79******************99**********************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.5831077IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-121345IPR009057Homeodomain-like
SMARTSM007172.9E-131475IPR001005SANT/Myb domain
SuperFamilySSF466893.29E-151574IPR009057Homeodomain-like
PfamPF002491.9E-141573IPR001005SANT/Myb domain
CDDcd001679.45E-131773No hitNo description
Gene3DG3DSA:1.10.10.608.2E-144674IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRYPCCKVD EDLKKGPWTS EEDEKLMDYI TKNGHTNWQL IPKKAGLNRW SKIASHLPGR  60
TDNEIKNLWN THLKKKLLKS GIDPVTHQPI TDPNLLLSLS NLMNPFESAL RLQAELTEIA  120
KIHIIQNIIQ VLNTPPPTLI PSLQENNYPM QQCYNNIIAP YDQILTNEPS PISNNLSDNM  180
VVNSSILENN MINIVDNNSE YSSLPSLVPV TPENSVPFDQ QIIDMINPSY YDDFYALEKI  240
LDDEANII*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030610
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166577.11e-180PREDICTED: transcription factor MYB39-like
SwissprotQ9S9Z26e-36MYB93_ARATH; Transcription factor MYB93
TrEMBLM1BH841e-179M1BH84_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000451831e-180(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-40myb domain protein 9
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]