PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030717
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family S1Fa-like
Protein Properties Length: 70aa    MW: 7612.28 Da    PI: 10.7353
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030717genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA131.81.8e-41369470
                  S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                          + ve+ G+nPGlivll++ggl+l+fl+gny+lyvyaqk+lPP+kkkP+skkk+k+e+lkqGv++PGe
  PGSC0003DMP400030717  3 KDVEVNGFNPGLIVLLLIGGLVLTFLIGNYVLYVYAQKTLPPKKKKPISKKKMKKERLKQGVSAPGE 69
                          568***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046892.4E-39569IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MAKDVEVNGF NPGLIVLLLI GGLVLTFLIG NYVLYVYAQK TLPPKKKKPI SKKKMKKERL  60
KQGVSAPGE*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030717
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2547221e-104AC254722.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-53k5 map 10, complete sequence.
GenBankHG9755221e-104HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249690.17e-41DNA-binding protein S1FA
RefseqXP_006361668.17e-41PREDICTED: DNA-binding protein S1FA-like
RefseqXP_015055951.17e-41DNA-binding protein S1FA-like
RefseqXP_015055952.17e-41DNA-binding protein S1FA-like
RefseqXP_016543084.17e-41PREDICTED: DNA-binding protein S1FA-like
RefseqXP_016543085.17e-41PREDICTED: DNA-binding protein S1FA-like
RefseqXP_019071702.17e-41DNA-binding protein S1FA
SwissprotQ423371e-14S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A2G2VTX62e-40A0A2G2VTX6_CAPBA; DNA-binding protein S1FA2
STRINGPGSC0003DMT4000453318e-41(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]