PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030987
Common NameLOC102601114
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 512aa    MW: 58448.2 Da    PI: 4.5735
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030987genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94.2e-12362403346
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rW++++ el+++av+q+G++  ++I + ++ gRt+ q+k+++ k
  PGSC0003DMP400030987 362 RWSKQDTELFYEAVQQFGTD-LSLIQQLFP-GRTRRQLKLKYKK 403
                           9*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159634.7E-29353437No hitNo description
PROSITE profilePS5129310.79358409IPR017884SANT domain
SMARTSM007171.9E-9359407IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-10361410IPR009057Homeodomain-like
CDDcd001672.17E-7362403No hitNo description
Gene3DG3DSA:1.10.10.606.8E-7362403IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MDTYSSLEAD ILGVTTISGQ SRRFQPKPKL QVYRERYDTI IPDLDVGESV SCLPDSHSVH  60
SEMDFVDNGK EHGLPAADVL DFSVRGFDNN IITESAHEFP VHEEYVAEAS LPDADIPAKH  120
SEATSQMPEE PVPQRPKTKK QKFSASELSA ISEENGESRS LRSRRKSVNA SRLVDEFDED  180
VIGDGEYVPE HPNDSVTIGN DEEFLVENDS QGKKVQKKSK KTVTKEGKRV RKSKKTAEAS  240
DQAANKKPKK FSHSTRQKRR TVDKTLLEAP MDEIDYSKVP IKDLILLAEH KERLAKKDAA  300
VSQIPTTTDQ SARASVSNYD EDETYASDED GEADDHSKST MAEDTSAYFN YQTYMDKTPS  360
TRWSKQDTEL FYEAVQQFGT DLSLIQQLFP GRTRRQLKLK YKKEERQNPF RLHDALTNRS  420
KDHSHFERVI ERLKQIEAEE LQYADKDESI DLTGEEEMGT QEIYEEEAKS EHVEEKEVET  480
VEQDVPEMEN PVKEYDDEDD FMKWSQYTSE V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215234QKKSKKTVTKEGKRVRKSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030987
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153680.0AC215368.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0044O16, complete sequence.
GenBankAC2153790.0AC215379.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0075D08, complete sequence.
GenBankAC2154790.0AC215479.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0049G16, complete sequence.
GenBankGU0488950.0GU048895.1 Solanum lycopersicum clone BAC CaCM511O09-Tomato, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363192.10.0PREDICTED: transcription factor TFIIIB component B'' isoform X2
TrEMBLM1BI380.0M1BI38_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000457280.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.16e-51MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]