PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030988
Common NameLOC102601114
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 615aa    MW: 69270.9 Da    PI: 4.4363
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030988genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.4e-12465506346
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rW++++ el+++av+q+G++  ++I + ++ gRt+ q+k+++ k
  PGSC0003DMP400030988 465 RWSKQDTELFYEAVQQFGTD-LSLIQQLFP-GRTRRQLKLKYKK 506
                           9*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159636.2E-29456540No hitNo description
PROSITE profilePS5129310.79461512IPR017884SANT domain
SMARTSM007171.9E-9462510IPR001005SANT/Myb domain
SuperFamilySSF466892.39E-10464513IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-7465506IPR009057Homeodomain-like
CDDcd001671.27E-7465506No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MVITDNNENW KSCFEKSEGE NADIYIGLDS FDDLLPHSSG IDPSAAHAAG AEKQQEQLLI  60
PVSSVDGSAH SASNLQSDEV AAGQDPLTFQ ASVLSVSGSC QMEMDTYSSL EADILGVTTI  120
SGQSRRFQPK PKLQVYRERY DTIIPDLDVG ESVSCLPDSH SVHSEMDFVD NGKEHGLPAA  180
DVLDFSVRGF DNNIITESAH EFPVHEEYVA EASLPDADIP AKHSEATSQM PEEPVPQRPK  240
TKKQKFSASE LSAISEENGE SRSLRSRRKS VNASRLVDEF DEDVIGDGEY VPEHPNDSVT  300
IGNDEEFLVE NDSQGKKVQK KSKKTVTKEG KRVRKSKKTA EASDQAANKK PKKFSHSTRQ  360
KRRTVDKTLL EAPMDEIDYS KVPIKDLILL AEHKERLAKK DAAVSQIPTT TDQSARASVS  420
NYDEDETYAS DEDGEADDHS KSTMAEDTSA YFNYQTYMDK TPSTRWSKQD TELFYEAVQQ  480
FGTDLSLIQQ LFPGRTRRQL KLKYKKEERQ NPFRLHDALT NRSKDHSHFE RVIERLKQIE  540
AEELQYADKD ESIDLTGEEE MGTQEIYEEE AKSEHVEEKE VETVEQDVPE MENPVKEYDD  600
EDDFMKWSQY TSEV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318337QKKSKKTVTKEGKRVRKSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030988
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153680.0AC215368.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0044O16, complete sequence.
GenBankAC2153790.0AC215379.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0075D08, complete sequence.
GenBankAC2154790.0AC215479.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0049G16, complete sequence.
GenBankGU0488950.0GU048895.1 Solanum lycopersicum clone BAC CaCM511O09-Tomato, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363192.10.0PREDICTED: transcription factor TFIIIB component B'' isoform X2
TrEMBLM1BI380.0M1BI38_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000457280.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-50MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]