PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400031038
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 166aa    MW: 19065 Da    PI: 8.6428
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400031038genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.52.8e-26959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          kri++k  rqv f+kRr+g+lKKA+E+S+LCd++vav+i+s++g+l+e+ss
  PGSC0003DMP400031038  9 KRIQDKNCRQVAFCKRRKGLLKKAKEISILCDVDVAVVIISNRGRLHEFSS 59
                          79***********************************************96 PP
2K-box34.77.7e-13971542683
                 K-box  26 keienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                              e Lq++ R+l   + + L++ +L +Le++L+++l ++Rs+K++l+le  ++l +k
  PGSC0003DMP400031038  97 TMGELLQTTERQLEETNADGLTVTDLIHLENELQTALIQVRSRKTHLMLECAKDLHEK 154
                           55689*********************************************99998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.525161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-27279IPR002100Transcription factor, MADS-box
CDDcd002654.90E-32273No hitNo description
PRINTSPR004049.0E-24323IPR002100Transcription factor, MADS-box
PfamPF003196.2E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.58185165IPR002487Transcription factor, K-box
PfamPF014861.9E-997154IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MGRRKVEIKR IQDKNCRQVA FCKRRKGLLK KAKEISILCD VDVAVVIISN RGRLHEFSSN  60
NSLSGMLQRY ESHVEAEKEI NAEIQVAEHS KYSGFTTMGE LLQTTERQLE ETNADGLTVT  120
DLIHLENELQ TALIQVRSRK THLMLECAKD LHEKVPYTLF LWRLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-16184184Myocyte-specific enhancer factor 2B
1tqe_Q6e-16184184Myocyte-specific enhancer factor 2B
1tqe_R6e-16184184Myocyte-specific enhancer factor 2B
1tqe_S6e-16184184Myocyte-specific enhancer factor 2B
6c9l_A6e-16184184Myocyte-specific enhancer factor 2B
6c9l_B6e-16184184Myocyte-specific enhancer factor 2B
6c9l_C6e-16184184Myocyte-specific enhancer factor 2B
6c9l_D6e-16184184Myocyte-specific enhancer factor 2B
6c9l_E6e-16184184Myocyte-specific enhancer factor 2B
6c9l_F6e-16184184Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400031038
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755243e-72HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170242.11e-109PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
TrEMBLM1BI811e-118M1BI81_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000458042e-92(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.17e-34MIKC_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]