PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400031039
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25940.7 Da    PI: 9.114
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400031039genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.74.9e-26959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          kri++k  rqv f+kRr+g+lKKA+E+S+LCd++vav+i+s++g+l+e+ss
  PGSC0003DMP400031039  9 KRIQDKNCRQVAFCKRRKGLLKKAKEISILCDVDVAVVIISNRGRLHEFSS 59
                          79***********************************************96 PP
2K-box211.4e-081301653671
                 K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                           R+l   + + L++ +L +Le++L+++l ++Rs+K  
  PGSC0003DMP400031039 130 RQLEETNADGLTVTDLIHLENELQTALIQVRSRKVF 165
                           66666666789***********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.525161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-27279IPR002100Transcription factor, MADS-box
CDDcd002652.80E-31273No hitNo description
PRINTSPR004041.8E-23323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-233859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRRKVEIKR IQDKNCRQVA FCKRRKGLLK KAKEISILCD VDVAVVIISN RGRLHEFSSN  60
NSLSGMLQRY ESHVEAEKEI NAEIQVAEHS KYSGFTTMGE LLQTTERYRS YSSLLFLKAY  120
TTYLLSQFDR QLEETNADGL TVTDLIHLEN ELQTALIQVR SRKVFLLPSV PPPYRNCINQ  180
NSGNLGSATS YTSYFCSVFY KNSHFFFKIM FDFSIIIWLS ISTSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-14191191MEF2C
5f28_B1e-14191191MEF2C
5f28_C1e-14191191MEF2C
5f28_D1e-14191191MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400031039
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-150HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170242.18e-93PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
TrEMBLM1BI821e-166M1BI82_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000458041e-167(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.27e-32MIKC_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]