PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400031061
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 233aa    MW: 27255.9 Da    PI: 6.726
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400031061genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-2074129257
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                           rkR  +++eq+  Le+ F  ++++ +e++++LA++lgL+  qV vWFqNrRa++k+
  PGSC0003DMP400031061  74 RKRKLLSEEQVSLLERSFGDEHKLETERKAKLASELGLDPHQVAVWFQNRRARWKN 129
                           89****************************************************95 PP
2HD-ZIP_I/II109.72e-3575165292
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           k++ ls+eqv+lLE+sF  e+kLe+erK++la+eLgl+p+qvavWFqnrRAR+k+k+lE++y++Lk++++    e+ +Le+ev +++e+
  PGSC0003DMP400031061  75 KRKLLSEEQVSLLERSFGDEHKLETERKAKLASELGLDPHQVAVWFQNRRARWKNKKLEEEYSKLKTQHEDTIIEKYHLETEVLKMKEQ 163
                           66778**********************************************************************************99 PP

           HD-ZIP_I/II  91 lk 92 
                           l 
  PGSC0003DMP400031061 164 LF 165
                           85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.49170130IPR001356Homeobox domain
SuperFamilySSF466893.76E-1872132IPR009057Homeodomain-like
SMARTSM003893.7E-1972134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-2074137IPR009057Homeodomain-like
CDDcd000868.38E-1674131No hitNo description
PfamPF000461.9E-1774129IPR001356Homeobox domain
PRINTSPR000316.2E-6101110IPR000047Helix-turn-helix motif
PROSITE patternPS000270105128IPR017970Homeobox, conserved site
PRINTSPR000316.2E-6110126IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSSREPDDPL DTPLIMIKDR IARSRYNLCH SLCPSGEHSV VSILCALEET VKPQRRRKKN  60
KVEGRNNTSE VVMRKRKLLS EEQVSLLERS FGDEHKLETE RKAKLASELG LDPHQVAVWF  120
QNRRARWKNK KLEEEYSKLK TQHEDTIIEK YHLETEVLKM KEQLFEAEKK IERLLLEHKS  180
DISSNNSPTS SIFSMEQPHF NLGEFGMEGQ LMDDNMFFVA DYQSNYVTLW DN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15676RKKNKVEGRNNTSEVVMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400031061
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-149HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366985.11e-134PREDICTED: homeobox-leucine zipper protein ATHB-21-like
SwissprotQ9ZU703e-49ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLM1BI971e-172M1BI97_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000458321e-172(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-48homeobox protein 40
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]