PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400031076
Common NameLOC102605294
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 214aa    MW: 25287.7 Da    PI: 8.9073
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400031076genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2055110257
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                           rkR  +++eq++ Le+ F  ++++ +e++++LA++lgL+  qV vWFqNrRa++k+
  PGSC0003DMP400031076  55 RKRKLLSEEQVNLLERSFGDQHKLETERKAKLASELGLDPHQVAVWFQNRRARWKN 110
                           89****************************************************95 PP
2HD-ZIP_I/II109.62.3e-3556146292
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           k++ ls+eqv+lLE+sF  ++kLe+erK++la+eLgl+p+qvavWFqnrRAR+k+k+lE++y++Lk++++    e+ rLe+ev +++++
  PGSC0003DMP400031076  56 KRKLLSEEQVNLLERSFGDQHKLETERKAKLASELGLDPHQVAVWFQNRRARWKNKKLEEEYSKLKTQHEDTIIEKYRLEAEVLKMKDQ 144
                           66778**********************************************************************************99 PP

           HD-ZIP_I/II  91 lk 92 
                           l 
  PGSC0003DMP400031076 145 LC 146
                           86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.52451111IPR001356Homeobox domain
SMARTSM003891.8E-1953115IPR001356Homeobox domain
SuperFamilySSF466892.18E-1853113IPR009057Homeodomain-like
CDDcd000865.26E-1655112No hitNo description
PfamPF000461.2E-1755110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-2055118IPR009057Homeodomain-like
PRINTSPR000315.4E-68291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000315.4E-691107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MTGNKVDDQM ELISHFYPQI YSQLAQQQEE TVKPRRRRKR NKVEGRNNTS EVVMRKRKLL  60
SEEQVNLLER SFGDQHKLET ERKAKLASEL GLDPHQVAVW FQNRRARWKN KKLEEEYSKL  120
KTQHEDTIIE KYRLEAEVLK MKDQLCEAKK KIERLLLERK IDISSNNSPT SSIFSMEQSH  180
FSLGEFGMEG QLMDDSMLFV ADYQSNYVTL WDN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13542RRRKRNKV
23757RKRNKVEGRNNTSEVVMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400031076
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-149HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366987.11e-158PREDICTED: homeobox-leucine zipper protein ATHB-21-like
SwissprotQ9ZU703e-58ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLM1BIA91e-156M1BIA9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000458551e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-49homeobox protein 40
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]