PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032248
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 149aa    MW: 17889.1 Da    PI: 10.602
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032248genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-182676656
                          S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          +ft+eq++ Le++F+   ++  +e+ +LA++lgL+ rqV +WFqN+Ra++k
  PGSC0003DMP400032248 26 RFTDEQVKLLETMFKLGTKIEPREKLKLARELGLQPRQVAIWFQNKRARWK 76
                          7*************************************************9 PP
2HD-ZIP_I/II116.41.7e-3724112391
           HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                            +r+++eqvklLE++F+  +k+ep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+ L++++d+l+ + e+L++e+e+L  ++
  PGSC0003DMP400032248  24 VKRFTDEQVKLLETMFKLGTKIEPREKLKLARELGLQPRQVAIWFQNKRARWKSKQLEHEYRILQSNFDNLNMQFESLKTEKERLLIQV 112
                           58**********************************************************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.391878IPR001356Homeobox domain
SMARTSM003891.3E-162082IPR001356Homeobox domain
SuperFamilySSF466891.8E-182489IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-192585IPR009057Homeodomain-like
CDDcd000867.04E-132679No hitNo description
PfamPF000465.3E-162676IPR001356Homeobox domain
PRINTSPR000314.6E-64958IPR000047Helix-turn-helix motif
PROSITE patternPS0002705376IPR017970Homeobox, conserved site
PRINTSPR000314.6E-65874IPR000047Helix-turn-helix motif
PfamPF021839.0E-1478115IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEPELENSEI SNFKKPFKNK CENVKRFTDE QVKLLETMFK LGTKIEPREK LKLARELGLQ  60
PRQVAIWFQN KRARWKSKQL EHEYRILQSN FDNLNMQFES LKTEKERLLI QVSYLISLVK  120
ILTLLLPRNL WKRINFVLFF FKTVGDIK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032248
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350490.18e-74PREDICTED: homeobox-leucine zipper protein ATHB-7-like
SwissprotP468973e-37ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLM1BL431e-101M1BL43_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000476223e-73(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-39homeobox 7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]