PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032249
Common NameLOC102585726
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 215aa    MW: 25306.1 Da    PI: 4.8208
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032249genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-182676656
                          S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          +ft+eq++ Le++F+   ++  +e+ +LA++lgL+ rqV +WFqN+Ra++k
  PGSC0003DMP400032249 26 RFTDEQVKLLETMFKLGTKIEPREKLKLARELGLQPRQVAIWFQNKRARWK 76
                          7*************************************************9 PP
2HD-ZIP_I/II114.56.3e-3724114393
           HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                            +r+++eqvklLE++F+  +k+ep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+ L++++d+l+ + e+L++e+e+L  +l
  PGSC0003DMP400032249  24 VKRFTDEQVKLLETMFKLGTKIEPREKLKLARELGLQPRQVAIWFQNKRARWKSKQLEHEYRILQSNFDNLNMQFESLKTEKERLLIQL 112
                           58***********************************************************************************9888 PP

           HD-ZIP_I/II  92 ke 93 
                           ++
  PGSC0003DMP400032249 113 ET 114
                           75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.391878IPR001356Homeobox domain
SMARTSM003891.3E-162082IPR001356Homeobox domain
SuperFamilySSF466894.23E-182489IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-192585IPR009057Homeodomain-like
PfamPF000461.1E-152676IPR001356Homeobox domain
CDDcd000868.08E-142679No hitNo description
PRINTSPR000317.7E-64958IPR000047Helix-turn-helix motif
PROSITE patternPS0002705376IPR017970Homeobox, conserved site
PRINTSPR000317.7E-65874IPR000047Helix-turn-helix motif
PfamPF021839.5E-1478119IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEPELENSEI SNFKKPFKNK CENVKRFTDE QVKLLETMFK LGTKIEPREK LKLARELGLQ  60
PRQVAIWFQN KRARWKSKQL EHEYRILQSN FDNLNMQFES LKTEKERLLI QLETLNDQLE  120
NNNTRGSGSQ DSRDSELQHT SPENGFTELE LKDCSGSRFD HKSINEEDDD TRDKYFTPKE  180
ESELWNLEEL GDNNSLEHWC VGLGSISNSK LWDF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032249
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3684841e-164AY368484.1 Capsicum annuum HD-ZIP (HD-Zip) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350490.11e-155PREDICTED: homeobox-leucine zipper protein ATHB-7-like
TrEMBLM1BL441e-153M1BL44_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000476221e-154(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.14e-41homeobox 7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]