PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032296
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 268aa    MW: 31373.8 Da    PI: 6.32
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032296genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.52e-26154203352
                RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                           ++++le++++yF+ pi++AAkeL v+lTvLK++CR+++I+RWPhRk+ksl
  PGSC0003DMP400032296 154 DTLELEEIQRYFHVPITKAAKELRVGLTVLKKRCRELNIMRWPHRKLKSL 203
                           789*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.803137225IPR003035RWP-RK domain
PfamPF020421.2E-23155203IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDVKSQVLDV LKMENQNDHF DWLYSEEEYP PSTFGTWQRD SRLSNGGLLN FEFDPFQLPN  60
DLKNNHLPYF GLVEFEEICQ DLGSFDLKLL PSPFQEDNNT LIIHDANFNA MPLNVAHDPL  120
GESQVTTPAF YEIRGDSMDI IQKRNNNMRN KKSDTLELEE IQRYFHVPIT KAAKELRVGL  180
TVLKKRCREL NIMRWPHRKL KSLQTLIHSV KEMGLTSEVE MLEEHQRMVE RVPEMELTDR  240
TKKLRQACFK ANYKKRRASM AMAADFY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032296
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010318117.11e-180protein RKD3
TrEMBLM1BL910.0M1BL91_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000476810.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.12e-44RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]