PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032443
Common NameLOC107062623
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 200aa    MW: 22475.2 Da    PI: 9.1142
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032443genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-124791347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          rW+ +E+  ++ +  +lG+g+W++Ia+ +   Rt+ q+ s+ qky
  PGSC0003DMP400032443 47 RWSDDEQRAFLSGLDKLGKGNWTRIAKDFVPSRTPTQVASHAQKY 91
                          9*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4274096IPR017930Myb domain
SuperFamilySSF466891.58E-144397IPR009057Homeodomain-like
SMARTSM007171.5E-104494IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-124493IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-154595IPR006447Myb domain, plants
CDDcd001678.84E-104792No hitNo description
PfamPF002491.3E-104791IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAKKIQETIK LFGVEISVKN VSSSGEESTS DTRGMSCTSH RNSKGRRWSD DEQRAFLSGL  60
DKLGKGNWTR IAKDFVPSRT PTQVASHAQK YFDRQKENRA LKCKKSSVFD INLDEESSNT  120
CLELLSKRAL KEYNKKGKEV LNEENPISAM PISYRLPPDG SYGYCYVPMN NYQFNFMSSF  180
HRASSQSSSA SVDDLDLTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032443
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168974.11e-148PREDICTED: transcription factor MYB1R1-like
TrEMBLM1BLL91e-147M1BLL9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000479121e-148(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13677916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-24MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]