PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032449
Common NameLOC102590916
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 220aa    MW: 24934.9 Da    PI: 4.952
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032449genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.71.7e-1412491350
                          HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          + k +++i KK  ELS+LCd++++vi++ ++g++ +++
  PGSC0003DMP400032449 12 YKKKKETIKKKTRELSILCDIKACVILVDPDGEVDTWP 49
                          89***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.5E-13973IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.4751052IPR002100Transcription factor, MADS-box
PfamPF003192.4E-101048IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEKKMKGNML NYKKKKETIK KKTRELSILC DIKACVILVD PDGEVDTWPE NPTDFNPIIQ  60
SYKENLFHGK RKRIDDDGCF QKKSKKNHAL FCDDGEDQWL NDVFKESNES LLVKLNSKLE  120
AVERRIEFLK MMNYGNGIVG GSTSSEKESL LANQETHNSD FEVAINGDRF ENSSAYNQET  180
EIAIAAELWV IAGDESAHDH GQEIDFLRGN ATLNNLNNV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032449
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2327030.0AC232703.2 Solanum lycopersicum chromosome 05 clone C05HBa0190L02, complete sequence.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357627.11e-162PREDICTED: uncharacterized protein LOC102590916
TrEMBLM1BLM51e-160M1BLM5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000479191e-161(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1595856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02235.11e-07AGAMOUS-like 51
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]