PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400032838
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SAP
Protein Properties Length: 375aa    MW: 42500.5 Da    PI: 5.946
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400032838genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP584.13.9e-178137491455
                   SAP  91 llwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpa........d...vdedndadalsCrclalsdkylaaGfa 168
                           +lwq+ltrriW+r +llr+tWreeyiy+h+ta+nf + ry+y tl+f p         d   ++++n++d+l Cr+lalsd++laaGf+
  PGSC0003DMP400032838   1 MLWQNLTRRIWNRHELLRQTWREEYIYWHQTANNFLHHRYTYNTLHFVPEnnvdgdddDddnNNNNNNNDSLFCRRLALSDHHLAAGFS 89 
                           59*********************************************885222222111111223456789****************** PP

                   SAP 169 dGavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWw 257
                           +G+v+lf l  rlh+st++p+hrdrlGrfsravsGi++sd +lvfa+ldGdihv vi    aa++rra+lGdvvndGalvdf+Gs++Ww
  PGSC0003DMP400032838  90 NGSVQLFFLPRRLHLSTYHPHHRDRLGRFSRAVSGIILSDVQLVFASLDGDIHVVVIGD--AAPPRRAHLGDVVNDGALVDFTGSDQWW 176
                           *********************************************************98..78************************** PP

                   SAP 258 vGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGli 346
                           vGlyaGvpGrafhiW+ eteelvfvGG ltdPea+mGWh+ltelte+vGr+rvt +etavaCtsl+l+v+dl+nqg+++r + +rrG+i
  PGSC0003DMP400032838 177 VGLYAGVPGRAFHIWNRETEELVFVGGELTDPEALMGWHLLTELTEIVGRIRVTTQETAVACTSLQLMVIDLQNQGIIIRAQPSRRGII 265
                           ***************************************************************************************** PP

                   SAP 347 vssldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvad 434
                           v+s+da+ne++v+vd+rG+a+vrr++nlee +rf+vrg  qrgv+gC+nggy+ ++ g v+rvW+ie+ + ylys+ er+g+vna++ad
  PGSC0003DMP400032838 266 VASFDAYNETLVAVDTRGMASVRRADNLEERSRFNVRGaNQRGVVGCINGGYGFMWLGNVVRVWDIENGN-YLYSFGERIGDVNAIIAD 353
                           **************************************99***************************976.****************** PP

                   SAP 435 drhvavsssdgtihlldfgaq 455
                           +r+v ++ssd+tihl+dfgaq
  PGSC0003DMP400032838 354 ERYVVACSSDATIHLWDFGAQ 374
                           *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF509981.94E-1331203IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
Gene3DG3DSA:2.130.10.109.1E-1169151IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.130.10.109.1E-11214371IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509981.94E-13243371IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
PROSITE profilePS5029410.575326374IPR017986WD40-repeat-containing domain
PROSITE profilePS500828.771353374IPR001680WD40 repeat
PROSITE patternPS006780357371IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MLWQNLTRRI WNRHELLRQT WREEYIYWHQ TANNFLHHRY TYNTLHFVPE NNVDGDDDDD  60
DNNNNNNNND SLFCRRLALS DHHLAAGFSN GSVQLFFLPR RLHLSTYHPH HRDRLGRFSR  120
AVSGIILSDV QLVFASLDGD IHVVVIGDAA PPRRAHLGDV VNDGALVDFT GSDQWWVGLY  180
AGVPGRAFHI WNRETEELVF VGGELTDPEA LMGWHLLTEL TEIVGRIRVT TQETAVACTS  240
LQLMVIDLQN QGIIIRAQPS RRGIIVASFD AYNETLVAVD TRGMASVRRA DNLEERSRFN  300
VRGANQRGVV GCINGGYGFM WLGNVVRVWD IENGNYLYSF GERIGDVNAI IADERYVVAC  360
SSDATIHLWD FGAQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400032838
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342293.10.0PREDICTED: transcriptional regulator STERILE APETALA-like
SwissprotQ9FKH11e-138SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLM1BMI10.0M1BMI1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000484860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40992345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-139SAP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]