PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033088
Common NameLOC102593998
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family DBB
Protein Properties Length: 300aa    MW: 32030 Da    PI: 5.1143
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033088genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box171.3e-05447542
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                           C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  PGSC0003DMP400033088  4 QCNVCEVAEAKVLCCADEAALCWYCDDKVHAAnklankHQRVPL 47
                          7*****999*********************66889999999986 PP
2zf-B_box26.61.2e-085386235
              zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35
                           ++kC+ ++e    +fC +++ llC++C  ++H 
  PGSC0003DMP400033088 53 PMPKCDICQETVGFFFCLEDRALLCRKCDISIHT 86
                          689*******9999*******************3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.224147IPR000315B-box-type zinc finger
CDDcd000211.83E-6347No hitNo description
SMARTSM003367.7E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9875299IPR000315B-box-type zinc finger
SMARTSM003367.3E-155299IPR000315B-box-type zinc finger
PfamPF006431.2E-65395IPR000315B-box-type zinc finger
CDDcd000212.58E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MKIQCNVCEV AEAKVLCCAD EAALCWYCDD KVHAANKLAN KHQRVPLSAS SSPMPKCDIC  60
QETVGFFFCL EDRALLCRKC DISIHTVNAY VSSHQRFLLT GVKVGLEPLG PSASASSGKS  120
PSIQKVAEQE SPPIPKSVAP LSSATPSEGV LPVHTSGNGN FAPSRLPMVG GSAAGIIPQW  180
QFDQYLGMGD FNQNYGYMDY GQSKADNGKL GESASSPFLR DADAEVAGDE CFSTEVADTC  240
WAVPQIPSPP TASGLNWPTK TIQNPFDAAL LESDASYFPL QNIQDQQSNG SGSKRSRHF*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033088
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095331e-134AC209533.1 Solanum lycopersicum DNA sequence from clone LE_HBa-140M1 on chromosome 12, complete sequence.
GenBankHG9755241e-134HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367654.10.0PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM22e-88BBX22_ARATH; B-box zinc finger protein 22
TrEMBLM1BN320.0M1BN32_SOLTU; B-box zinc finger protein 17
STRINGPGSC0003DMT4000489640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-88light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]