PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033253
Common NameLOC102594888
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 576aa    MW: 64041.6 Da    PI: 7.3788
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033253genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.6e-093744062254
                           SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           ++yp+ +++  LAk++gL+ +qV++WF N R +
  PGSC0003DMP400033253 374 HPYPTDSDKVMLAKQTGLSRNQVSNWFINARVR 406
                           89*****************************88 PP
2BELL96.32.6e-31232301372
                  BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                            e+++  +kL+s+l+eV++rYkqy++qlq v++sFe v glg+a+p+++l lka+S+hFrcLk+ai++q+
  PGSC0003DMP400033253 232 SEHRRNNSKLISMLDEVYRRYKQYYQQLQGVVASFESVPGLGNAAPFANLSLKALSKHFRCLKNAICDQM 301
                           6899999************************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-43179299IPR006563POX domain
PfamPF075262.8E-33184297IPR006563POX domain
PROSITE profilePS5007112.034347410IPR001356Homeobox domain
SMARTSM003892.7E-10350414IPR001356Homeobox domain
CDDcd000866.22E-12350411No hitNo description
SuperFamilySSF466895.56E-17352417IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27353414IPR009057Homeodomain-like
PfamPF059201.4E-18367406IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MAAEGFEAYH VPQQSRRDKL RGDTNTNTNT NFLPNFYNNN PSYLLNPCDN FLLIKSMDPQ  60
ISSSFHQINN NPFLYNTNQN HDIDVVSSST YHNNNSKNSI TTYVTPGQGL SLSLSSHNHH  120
QRNSTTTSNN STVPLELNLQ RYDSSLFTTV QAAATAADCC NNEFLSSKSG GSTTVGPFTG  180
YASILKGSRF LKPAQQLLED ICGIYAQKLL EDDDSLGIMD DSSIDASNDD GSEHRRNNSK  240
LISMLDEVYR RYKQYYQQLQ GVVASFESVP GLGNAAPFAN LSLKALSKHF RCLKNAICDQ  300
MNYTIKSQTH SHNSQINCDD STSTRSVGKG NFNYNNFQRT GFVEHHQPVW RPQRGLPERA  360
VTVLRAWLFD HFLHPYPTDS DKVMLAKQTG LSRNQVSNWF INARVRLWKP MVEEIHMLET  420
RQANKSSSQR MQGLNNNNNN NIPIEVHFPT SNNSLPSTSS AQQVPSKRTR NNSPEDEMNL  480
SYSRVGIDQV MSASSGGNGG GVSLTLGLHH QNNNIGIGGL SSESFPRNAA RRFGIDANND  540
GFMFGDGFEP QNHQIGRDHN NNNIIGGQLL HDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-15356413158Homeobox protein Meis1
4xrs_B2e-15356413158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033253
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755229e-51HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349489.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLM1BNG60.0M1BNG6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000492350.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35202237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.16e-89TALE family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]