PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400033376

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

GRAS

Protein Properties

Length: 422aa MW: 46751.4 Da PI: 4.2494

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400033376	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	242.6	1.6e-74	134	421	1	294
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 l+++L++cAea+++++l+la+ l++ ++ as+ g +m+++a+yf+ AL +++r l p++ e++ s+ + f++ + PGSC0003DMP400033376 134 LITTLMACAEAIHENNLSLADVLISDIRRVtASQIGGAMKKVATYFADALYYKIHR--------LIPQDIVESSYSKDQLLHMSFYDSC 214 5789***********************9899999****************........33333333333334444457* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgs.pesg.skeeleetgerLakfAeelgvp 175 ++k++h+ta q le ++ +rvH+iDf+++qG +WpaLlq+La Rp+gpp +R+ g+g p+++ s++ l+e+g +La+fAe++gv+ PGSC0003DMP400033376 215 LLVKIAHFTASQSTLEIFADYKRVHVIDFSLNQGWHWPALLQTLALRPGGPPAFRLSGIGGqPQPDdSTDPLQEVGFKLAQFAESVGVE 303 *******************************************************861444499***************** PP GRAS 176 fefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 fef+ ++a++l+dle +L+++p E++aVn+v++l r+++ ++++e+ vL+l+++++Pk+v+++eqea+hn + F +r++e + PGSC0003DMP400033376 304 FEFRGFMAHTLADLEALMLNIRPsnVEVVAVNSVFELLRVFSIPGAIEK----VLDLINEIEPKIVTIAEQEANHNWSVFINRISEGWH 388 ******************9999***********77777777....******************************** PP GRAS 263 yysalfdsl.eaklpreseerikvErellgrei 294 yys++fd l +a + + +i++ +++lgrei PGSC0003DMP400033376 389 YYSTMFDLLeNADSINPNTLDIVMAEQYLGREI 421 *****6555556668899999999*98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.011	108	421	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.6E-72	134	421	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MSSPEMSMET IVEDEDSFVS DTDAIIYATT DISGWTHSLI SDHNIPNSLS STSVDENNHN 60 QQISTAAGGD DDSMIASSSA SSNWLTNNKQ IDVQQEIRIF NVDFRALCNN TCGGSEFRGG 120 LLPDTDRTVN QETLITTLMA CAEAIHENNL SLADVLISDI RRVTASQIGG AMKKVATYFA 180 DALYYKIHRL IPQDIVESSY SKDQLLHMSF YDSCLLVKIA HFTASQSTLE IFADYKRVHV 240 IDFSLNQGWH WPALLQTLAL RPGGPPAFRL SGIGGQPQPD DSTDPLQEVG FKLAQFAESV 300 GVEFEFRGFM AHTLADLEAL MLNIRPSNVE VVAVNSVFEL LRVFSIPGAI EKVLDLINEI 360 EPKIVTIAEQ EANHNWSVFI NRISEGWHYY STMFDLLENA DSINPNTLDI VMAEQYLGRE 420 I*

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MSSPEMSMET IVEDEDSFVS DTDAIIYATT DISGWTHSLI SDHNIPNSLS STSVDENNHN  60
QQISTAAGGD DDSMIASSSA SSNWLTNNKQ IDVQQEIRIF NVDFRALCNN TCGGSEFRGG  120
LLPDTDRTVN QETLITTLMA CAEAIHENNL SLADVLISDI RRVTASQIGG AMKKVATYFA  180
DALYYKIHRL IPQDIVESSY SKDQLLHMSF YDSCLLVKIA HFTASQSTLE IFADYKRVHV  240
IDFSLNQGWH WPALLQTLAL RPGGPPAFRL SGIGGQPQPD DSTDPLQEVG FKLAQFAESV  300
GVEFEFRGFM AHTLADLEAL MLNIRPSNVE VVAVNSVFEL LRVFSIPGAI EKVLDLINEI  360
EPKIVTIAEQ EANHNWSVFI NRISEGWHYY STMFDLLENA DSINPNTLDI VMAEQYLGRE  420
I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-39	141	421	26	300	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400033376

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015165084.1	0.0	PREDICTED: DELLA protein GAI-like isoform X1
Swissprot	Q7Y1B6	1e-115	GAI_SOLLC; DELLA protein GAI
TrEMBL	M1BNR8	0.0	M1BNR8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400049445	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12864	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	1e-107	GRAS family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400033376

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]