PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033601
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 478aa    MW: 52003.4 Da    PI: 9.3006
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033601genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-054870123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C++C+k F r  nL+ H r H
  PGSC0003DMP400033601 48 FVCEICNKGFQRDQNLQLHRRGH 70
                          89*******************88 PP
2zf-C2H211.60.00085124146123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC +C+k +  +s+ k H +t+
  PGSC0003DMP400033601 124 WKCDKCSKIYAVQSDWKAHSKTC 146
                           58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-54770IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.2E-64770No hitNo description
PfamPF121717.5E-54870IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0174870IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9494870IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.3E-4112145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.2E-6119144No hitNo description
SMARTSM00355180124144IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MAQNMISNHN HHEQPQKIKK KRNLPGNPDP DAEVIALSPK TLLATNRFVC EICNKGFQRD  60
QNLQLHRRGH NLPWKLKQRT NKENKKKAYV CPEPTCVHHH PSRALGDLTG IKKHFCRKHG  120
EKKWKCDKCS KIYAVQSDWK AHSKTCGTKE YRCDCGTLFS RKDSFVTHRA FCDALAEESA  180
RLSANSALMH RAAAASTIAN SAAIAGEPNF HLDQSSLFPF PANQRHFANP PPPLPISAAA  240
TAVTTHISLN PWDPQIPLNP NHTHEENHHQ IAHPVPIKTE SIHFPISPSL PFYHDQHYPV  300
FHRGSFSIPS PQLSATALLQ KAATMGTNST VNSTMAHLNR AALAHVTPNG FLSFGSENIP  360
GNWKKRDNLT RDFLGLTGDH HHHDHDDSSS SAGGVGVGVG VGGGGGGGQV MPHNGNVGNG  420
LLLSYGGNRM QDFQQTLYER DNSVLKHHQL GFGFAAAAAA AGVGAAAEST TGTWGNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35120186369Zinc finger protein JACKDAW
5b3h_F5e-35120186369Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033601
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349768.20.0PREDICTED: protein indeterminate-domain 9
TrEMBLM1BPB70.0M1BPB7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000497880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-111indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]