PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033688
Common NameLOC107062861
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19568.3 Da    PI: 5.797
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033688genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.33.5e-1224521442
                          HHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF 14 skRrngilKKAeELSvLCdaevaviifss 42
                          sk ++ ++KKA+E+S+LC++++a+ii+s 
  PGSC0003DMP400033688 24 SKMQKALFKKANEISILCGIQIAIIILSI 52
                          788899********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.002162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.975363IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-121385IPR002100Transcription factor, MADS-box
PfamPF003192.1E-92456IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MESKNSNVDL ALAKDKRAEG GKISKMQKAL FKKANEISIL CGIQIAIIIL SIDRQPIVFG  60
KPDAESVIHQ FLEANHPTAP RFYMKMKKKE EENKEKGKSV EDNITHRQSE DYESPYLGSL  120
LKLYEGLTEF ENQLTKEIDL TKLNQEIEKN EDPKIAPEMN VASSSTLPTN FSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033688
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-160HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169511.11e-124PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1BPI51e-123M1BPI5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000499041e-123(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]