PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033713
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 239aa    MW: 26704.7 Da    PI: 4.4906
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033713genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY29.51.5e-09146165221
                           --SS-EEEEEEE--TT-SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefp 21 
                           +D ++WrKYGqK++kgs++p
  PGSC0003DMP400033713 146 SDMWSWRKYGQKPIKGSPYP 165
                           79*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-8135165IPR003657WRKY domain
PROSITE profilePS5081112.507140165IPR003657WRKY domain
SuperFamilySSF1182909.94E-7143166IPR003657WRKY domain
SMARTSM007740.0031145179IPR003657WRKY domain
PfamPF031063.8E-5147165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEEDWDLHAV VRSCTAASSS GSNFQPRTDN DNNNSSVFCF QDPVLKSSIL LNKNKIIDDF  60
EELHQLCKPF YTQQSEQITV ISSPRKLLLQ NLPPSPSPSQ QQQQQFTLIQ PKRPLSCTLH  120
AQSPRTKRRK NQLKKVCEVA ADGLSSDMWS WRKYGQKPIK GSPYPSRDEK EDIFEDDDDE  180
FGVSDVGLDK MEPEDDFFDG LDELEIPATG EVSPEKFPGT FQFPWLANSA ATTAAGGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033713
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755221e-84HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169531.11e-106PREDICTED: WRKY transcription factor 22-like
TrEMBLM1BPK71e-176M1BPK7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000499331e-176(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.18e-25WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]