PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033936
Common NameLOC102597615
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 504aa    MW: 54938.2 Da    PI: 6.3594
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033936genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.61.5e-39157217262
                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                           ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s 
  PGSC0003DMP400033936 157 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSA 217
                           7899******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-30154214IPR003851Zinc finger, Dof-type
PfamPF027013.1E-32159215IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.919161215IPR003851Zinc finger, Dof-type
PROSITE patternPS013610163199IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MRQVKEPEIK LFGKKIFLPE NGKILPVIVT GEDSDVGKSV SASEVVTADE SSTGSDRDPC  60
LVDKEGNNSQ QDESDDGSEY EKEETDKDRM TRELSEAKLE EKDQNLMMEE SDNLKSPSEN  120
KTKTHTVDDD SPRVKSSKTE DDQNDASNTQ QKTLKKPDKI LPCPRCNSMD TKFCYYNNYN  180
VNQPRHFCKS CQRYWTAGGT MRNVPVGAGR RKNKNSASHC RHIMISEALE AARIDPPTGF  240
HHPAFKPNGT VLSFGPDLPL CDSMASVLNL AENNTPNGIR NGFYRREHKN PSGIGGENGD  300
DCSSGSSVTT SNSMAEGVKN RPPEAVMHTI NAFPSPVPCL PGVPWPIPYA AVPFPAITPA  360
GYPVPFCPPP YWNCNVPGPW SLPWLTPPSP TANQKGSSSA PNSPLGKHSR DGELLKPNNP  420
EGQKNSEGSV LIPKTLRIDD PDEAAKSSIW STLGIKYDSV SRGGLFKALQ PKSSEKDHPA  480
TTSPALQANP AAFSRSLSFQ ERV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00394DAPTransfer from AT3G47500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033936
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364590.10.0PREDICTED: cyclic dof factor 1-like
TrEMBLM1BQ210.0M1BQ21_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000502730.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53224122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.17e-91cycling DOF factor 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]