PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400033998
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 166aa    MW: 19177.8 Da    PI: 9.837
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400033998genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-1954107457
                           -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
              Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                           ++++++eq++ Le+ F   ++++ e++++LA++lgL+ +qV vWFqNrRa++kk
  PGSC0003DMP400033998  54 KRKLSEEQVNLLERSFGDAHKLDMETKAKLASELGLDLQQVAVWFQNRRARWKK 107
                           45899************************************************8 PP
2HD-ZIP_I/II107.41e-3453140289
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kr+ls+eqv+lLE+sF   +kL+ e K++la+eLgl+ +qvavWFqnrRAR+k+k++E +y++Lk++++    e++rLe++ ++L e
  PGSC0003DMP400033998  53 RKRKLSEEQVNLLERSFGDAHKLDMETKAKLASELGLDLQQVAVWFQNRRARWKKKKIEDEYSKLKSQHEITIVEKCRLETQSDDLLE 140
                           8*********************************************************************************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.53648108IPR001356Homeobox domain
SuperFamilySSF466891.47E-1749109IPR009057Homeodomain-like
SMARTSM003898.5E-1851112IPR001356Homeobox domain
CDDcd000865.03E-1553109No hitNo description
PfamPF000461.1E-1654107IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.0E-2155115IPR009057Homeodomain-like
PRINTSPR000311.1E-57988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000311.1E-588104IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MTHHQLDDHQ MVMISQYYTG INTQLVPDHQ GGVQPWRRRK KNKGETSSDE IVRKRKLSEE  60
QVNLLERSFG DAHKLDMETK AKLASELGLD LQQVAVWFQN RRARWKKKKI EDEYSKLKSQ  120
HEITIVEKCR LETQSDDLLE PIGEGSPLPK SGTCPKAKRK EEAKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13654RRRKKNKGETSSDEIVRKR
23855RKKNKGETSSDEIVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400033998
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-115HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234617.14e-81homeobox-leucine zipper protein ATHB-40-like
SwissprotQ9ZU703e-47ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLM1BQ701e-119M1BQ70_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000503731e-119(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-49homeobox protein 21
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]