PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400034115
Common NameLOC102590280
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 707aa    MW: 78373.4 Da    PI: 7.316
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400034115genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-094344711954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  PGSC0003DMP400034115 434 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 471
                           554459******************************88 PP
2BELL114.55.5e-37298369172
                  BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           +rqelq+kkakL+s+l+eVd+rY+qy++q+q+++ sFe+ +g+gs+k+Yt+lAl++iS++FrcLkdai +qi
  PGSC0003DMP400034115 298 QRQELQMKKAKLVSMLDEVDQRYRQYHHQMQMIATSFEQTTGIGSSKSYTQLALHTISKQFRCLKDAIFGQI 369
                           69********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.8E-49230367IPR006563POX domain
PfamPF075267.8E-45233365IPR006563POX domain
PROSITE profilePS5007112.131412475IPR001356Homeobox domain
CDDcd000863.04E-12415476No hitNo description
SMARTSM003894.2E-10415479IPR001356Homeobox domain
SuperFamilySSF466894.28E-17416482IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-29418482IPR009057Homeodomain-like
PfamPF059202.8E-18432471IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MAMYYQGGSE IQADGLQTLY LMNPNYIGYT DTHHHHQQHQ QQSANMFFLN SVAAGNFPHV  60
SLPLQAHAQG HLVGVPLPAG FQDPNRPSIP EIPTSHHGLL SRLWTSGDQN TPRGGGGGGE  120
GNGSQSHIPS STVVSPNSGS GGGTTTDFAS QLGFQRPGLV SPTQAHHQGL SLSLSPQQQM  180
NFRSSLPLDH RDISTTNHQV GILSPSPLPS PGTNTNHTRG LGASSSFSIS NGMIMGSKYL  240
KVAQDLLDEV VNVGKNIKLS EGGAKEKHKL DNELISLASD DVESSSQKNI VVELTTAQRQ  300
ELQMKKAKLV SMLDEVDQRY RQYHHQMQMI ATSFEQTTGI GSSKSYTQLA LHTISKQFRC  360
LKDAIFGQIK DTSKTLGEEE NIGGKIEGSK LKFVDHHLRQ QRALQQLGMM QTNAWRPQRG  420
LPERAVSVLR AWLFEHFLHP YPKDSDKIML AKQTGLTRSQ VSNWFINARV RLWKPMVEEM  480
YMEEVKKNNQ EQNIEPNNNE IVGSKSSVPQ EKLPISSNII HNASPNDIST STISTSPTGG  540
GGSIPAQTVA GFSFIRSLNM ENIDDQRNNK KARNEMQNCS TSTILSMERE IMNKVVQDET  600
IKSEKFNNTQ TRECYSLMTP NYTMDDQFGT RFNNQNHEQL ATTFHQGNGH VSLTLGLPPN  660
SENQHNYIGL ENHYNQPTHH PNISYENIDF QSGKRYATQL LQDFVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16421479563Homeobox protein Meis2
3k2a_B6e-16421479563Homeobox protein Meis2
Search in ModeBase
Function -- GeneRIF ? help Back to Top
  1. BEL11 RNA suppresses growth of tubers in potato.
    [PMID: 28084609]
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400034115
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4066980.0AF406698.1 Solanum tuberosum BEL1-related homeotic protein 11 (Bel11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362847.10.0PREDICTED: BEL1-like homeodomain protein 3
SwissprotQ9SJ561e-105BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLM1BQG30.0M1BQG3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000505270.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.33e-86BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Chen H,Rosin FM,Prat S,Hannapel DJ
    Interacting transcription factors from the three-amino acid loop extension superclass regulate tuber formation.
    Plant Physiol., 2003. 132(3): p. 1391-404
    [PMID:12857821]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Ghate TH,Sharma P,Kondhare KR,Hannapel DJ,Banerjee AK
    The mobile RNAs, StBEL11 and StBEL29, suppress growth of tubers in potato.
    Plant Mol. Biol., 2017. 93(6): p. 563-578
    [PMID:28084609]