PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400034313
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 91aa    MW: 9792.84 Da    PI: 5.7471
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400034313genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.31.3e-15447649
                          HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +  r  tfs+R+++++ K  ELS+L++a+vav+++s++gk y y
  PGSC0003DMP400034313  4 EEARAATFSRRKKTLFEKSGELSTLTGADVAVLLISPSGKPYSY 47
                          567999**********************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.6151IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-10150IPR002100Transcription factor, MADS-box
PfamPF003192.8E-18247IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-19273IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-51328IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-52849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MEAEEARAAT FSRRKKTLFE KSGELSTLTG ADVAVLLISP SGKPYSYGST SIEEVIEKYR  60
ELKSVDRQRD HADVGKSGDH ADVGKSGDQC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400034313
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754432e-93HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541016.15e-24PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1BQY42e-58M1BQY4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000508303e-59(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14083711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-15AGAMOUS-like 61
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]