PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400034714
Common NameLOC107062569
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 244aa    MW: 28106.5 Da    PI: 6.313
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400034714genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.7e-14653148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+W++eEd++ +d++ q+   +W+  ++  g+ Rt+k+c++rw +yl
  PGSC0003DMP400034714  6 KGAWSPEEDQKMIDYIMQYRIWNWSHMPKFAGLSRTGKSCRLRWINYL 53
                          79*****************999************************97 PP
2Myb_DNA-binding422.2e-1359104148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g+++ eE e+  +  + lG++ W++Ia++++ gRt++++k++++++l
  PGSC0003DMP400034714  59 KGPFSMEEVEIVFRMYQSLGNK-WSAIAKELP-GRTDNEIKNFYHTHL 104
                           799*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.744157IPR017930Myb domain
SuperFamilySSF466891.5E-264100IPR009057Homeodomain-like
SMARTSM007178.0E-10555IPR001005SANT/Myb domain
PfamPF002499.2E-12653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-21759IPR009057Homeodomain-like
CDDcd001671.97E-7853No hitNo description
PROSITE profilePS5129415.89458108IPR017930Myb domain
SMARTSM007174.9E-1358106IPR001005SANT/Myb domain
PfamPF002498.6E-1259104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2360106IPR009057Homeodomain-like
CDDcd001671.05E-861104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDYVKKGAWS PEEDQKMIDY IMQYRIWNWS HMPKFAGLSR TGKSCRLRWI NYLKPDLKKG  60
PFSMEEVEIV FRMYQSLGNK WSAIAKELPG RTDNEIKNFY HTHLKKHHGR KDEVKPKSRK  120
KAKQLEMSNQ KKPLITTCPN IEGPNDQSLD FTNSSSSSSY ITFDENYEIL ETSNQDNDVT  180
SIVNQVHDDD NIVILESNPE SSTSSSSSSV DLHINDFMDV SVHSSNVVDF WLELYLAADN  240
LKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2461067106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400034714
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-158HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-158HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168843.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLM1BRU60.0M1BRU6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000515100.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-45myb domain protein 15
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]